aabin2aastring

This function converts an ape AAbin into AAStringSet.

aabin2aastring(aabin)

Arguments

aabin

ape AAbin [mandatory]

Value

An object of class AAStringSet

See also

as.alignment as.DNAbin.alignment AAStringSet

Author

Kristian K Ullrich

Examples

data(woodmouse, package="ape")
## convert into AAStringSet
#aabin2aastring(ape::trans(woodmouse, 2))
ape::trans(woodmouse, 2) |> aabin2aastring()
#> Warning: sequence length not a multiple of 3: 2 nucleotides dropped
#> AAStringSet object of length 15:
#>      width seq                                              names               
#>  [1]   321 XRKTHPLLKXISHSFIDLPAPSN...LLPFLHTSKQRSLMFRPITQTL No305
#>  [2]   321 IRKTHPLLKIINHSFIDLPAPSN...LLPFLHTSKQRSLMFRPITQTL No304
#>  [3]   321 IRKTHPLLKIINHSFIDLPAPSN...LLPFLHTSKQRSLMFRPITQTL No306
#>  [4]   321 IRKTHPLLKIINHSFIDLPAPSN...LLPFLHTSKQRSLMFRPITQMX No0906S
#>  [5]   321 IRKTHPLLKIINHSFIDLPAPSN...LLPFLHTSKQRSLMFRPITQTX No0908S
#>  ...   ... ...
#> [11]   321 IRKTHPLLKIINHSFIDLPAPSN...LLPFLHTSKQRSLMFRPITQTX No1007S
#> [12]   321 XXXXXXXXXXXXXXXIDLPAPSN...LLPFLHTSKQRSLMFRPITQTX No1114S
#> [13]   321 IRKTHPLLKIINHSFIDLPAPSN...LLPFLHTSKQRSLMFRPITQTX No1202S
#> [14]   321 IRKTHPLLKIINHSFIDLPAPSN...LLPFLHTSKQRSLMFRPITQTX No1206S
#> [15]   321 XRKTHPLLKIINHSFIDLPAPSN...LLPFLHTSKQRSLMFRPITQTX No1208S