This function converts a codon into a number, but accept N and -.

codon2numberAMBIG(codon)

Arguments

codon

[mandatory]

Value

An object of class numeric

See also

Author

Kristian K Ullrich

Examples

#unlist(lapply(names(Biostrings::GENETIC_CODE), codon2numberAMBIG))
names(Biostrings::GENETIC_CODE) |> codon2numberAMBIG()
#> TTT TTC TTA TTG TCT TCC TCA TCG TAT TAC TAA TAG TGT TGC TGA TGG CTT CTC CTA CTG 
#>   1   2   3   4  37  38  39  40  73  74  75  76 109 110 111 112   7   8   9  10 
#> CCT CCC CCA CCG CAT CAC CAA CAG CGT CGC CGA CGG ATT ATC ATA ATG ACT ACC ACA ACG 
#>  43  44  45  46  79  80  81  82 115 116 117 118  13  14  15  16  49  50  51  52 
#> AAT AAC AAA AAG AGT AGC AGA AGG GTT GTC GTA GTG GCT GCC GCA GCG GAT GAC GAA GAG 
#>  85  86  87  88 121 122 123 124  19  20  21  22  55  56  57  58  91  92  93  94 
#> GGT GGC GGA GGG 
#> 127 128 129 130