Function reference • MSA2dist

All functions
`AAMatrix`	AAMatrix-data
`codon2number()`	GENETIC_CODE_TCAG
`aa2selfscore()`	aa2selfscore
`aabin2aastring()`	aabin2aastring
`aastring2aabin()`	aastring2aabin
`aastring2aln()`	aastring2aln
`aastring2dist()`	aastring2dist
`addmask2string()`	addmask2string
`addpop2string()`	addpop2string
`addpos2string()`	addpos2string
`addregion2string()`	addregion2string
`aln2aastring()`	aln2aastring
`aln2dnastring()`	aln2dnastring
`cds2aa()`	cds2aa
`cds2codonaln()`	cds2codonaln
`codon2numberAMBIG()`	codon2numberAMBIG
`codon2numberTCAG()`	codon2numberTCAG
`codonmat2pnps()`	codonmat2pnps
`codonmat2xy()`	codonmat2xy
`compareCodons()`	compareCodons
`dnabin2dnastring()`	dnabin2dnastring
`dnastring2aln()`	dnastring2aln
`dnastring2codonmat()`	dnastring2codonmat
`dnastring2dist()`	dnastring2dist
`dnastring2dnabin()`	dnastring2dnabin
`dnastring2kaks()`	dnastring2kaks
`getmask()`	getmask
`getpos()`	getpos
`globalDeletion()`	globalDeletion
`granthamMatrix()`	granthamMatrix
`hiv`	hiv-data
`iupac`	iupac-data
`iupacMatrix()`	iupacMatrix
`makePostalignedSeqs()`	makePostalignedSeqs
`popinteger()`	popinteger
`popnames()`	popnames
`rcpp_KaKs()`	rcpp_KaKs
`rcpp_distSTRING()`	rcpp_distSTRING
`rcpp_pairwiseDeletionAA()`	rcpp_pairwiseDeletionAA
`rcpp_pairwiseDeletionDNA()`	rcpp_pairwiseDeletionDNA
`region()`	region
`regionused()`	regionused
`string2region()`	string2region
`subString()`	subString
`uptriidx()`	uptriidx