This function is a fork from an internal function from Biostrings

makePostalignedSeqs(x)

Arguments

x

x

Value

get internal function makePostalignedSeqs

Author

Kristian K Ullrich

Examples

## define two cds sequences
cds1 <- Biostrings::DNAString("ATGCAACATTGC")
cds2 <- Biostrings::DNAString("ATGCATTGC")
makePostalignedSeqs(Biostrings::pairwiseAlignment(
    cds2aa(Biostrings::DNAStringSet(cds1)),
    cds2aa(Biostrings::DNAStringSet(cds2))))
#> [[1]]
#> AAStringSet object of length 2:
#>     width seq                                               names               
#> [1]     4 MQHC                                              
#> [2]     4 M-HC                                              
#> 
#> [[2]]
#> IRanges object with 2 ranges and 0 metadata columns:
#>           start       end     width
#>       <integer> <integer> <integer>
#>   [1]         1         4         4
#>   [2]         1         3         3
#> 
#> [[3]]
#> 4-letter BString object
#> seq: | ||
#>