All functions

CRBHitsColors()

CRBHitsColors

aa2rbh()

aa2rbh

aadir2orthofinder()

aadir2orthofinder

aafile2rbh()

aafile2rbh

aly

aly-data

ath

ath-data

ath_aly_crbh

ath_aly_crbh-data

ath_aly_ncbi_dagchainer

ath_aly_ncbi_dagchainer-data

ath_aly_ncbi_kaks

ath_aly_ncbi_kaks-data

cds2genepos()

cds2genepos

cds2kaks()

cds2kaks

cds2rbh()

cds2rbh

cdsdir2orthofinder()

cdsdir2orthofinder

cdsfile2aafile()

cdsfile2aafile

cdsfile2rbh()

cdsfile2rbh

col2transparent()

col2transparent

filter_alnlen()

filter_alnlen

filter_eval()

filter_eval

filter_pident()

filter_pident

filter_qcov()

filter_qcov

filter_rost1999()

filter_rost1999

filter_tcov()

filter_tcov

gff2longest()

gff2longest

gtf2longest()

gtf2longest

hom_pan_ensembl_kaks

hom_pan_ensembl_kaks-data

isoform2longest()

isoform2longest

makePostalignedSeqs()

makePostalignedSeqs

make_KaKs_Calculator2()

make_KaKs_Calculator2

make_dagchainer()

make_dagchainer

make_last()

make_last

make_vignette()

make_vignette

plot_dagchainer()

plot_dagchainer

plot_kaks()

plot_kaks

rbh2dagchainer()

rbh2dagchainer

rbh2kaks()

rbh2kaks

seqid()

seqid

tandemdups()

tandemdups