aastring2aabin

This function converts a AAStringSet into an ape DNAbin.

aastring2aabin(aa)

Arguments

aa

AAStringSet [mandatory]

Value

An object of class DNAbin

See also

as.alignment as.DNAbin.alignment

Author

Kristian K Ullrich

Examples

## define two cds sequences
cds1 <- Biostrings::DNAString("ATGCAACATTGC")
cds2 <- Biostrings::DNAString("ATG---CATTGC")
cds1.cds2.aln <- c(Biostrings::DNAStringSet(cds1),
    Biostrings::DNAStringSet(cds2))
## convert into AAbin
#aastring2aabin(cds2aa(cds1.cds2.aln))
cds1.cds2.aln |> cds2aa() |> aastring2aabin()
#> 2 amino acid sequences in a list
#> 
#> All sequences of the same length: 4 
#>